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Date

(every other week)

Attendees

  • T Nolan (present)

  • Aaron (present)
  • Jonathan (present)
  • Tuhin (present)
  • Lakshmi
  • Linda (present)
  • Kirk (present)
  • Fred 
  • Phil
  • Bill (present)
  • Quasar
  • Jeff
  • Terri
  • Sohrab (present)

Goals

  • Stand up a wiki
    • get everyone on the team into Confluence and into this Space
  • Set goals
  • Plan next steps toward achieving goals

Discussion items

TimeItemWhoNotes

infrastructure: 

hardware

software


  • import from <places> into Posda then into NBIA
  • There is a hangup between SECTRA to Posda-to-ARIES
  • Cancerimagingarchive.net has a landing page (Wordpress, Confluence, NBIA-for-search-and-download)


Mongodb to manage nonDICOM data? What processes <are, should be> built?



Collection 1: Gait and PDTuhin
  1. Linkage between ARIES ID and Virmani lab ID is established via secure server site
  2. Some of the data were not in SECTRA and don't have MRN (stored by name) but there exists a mapping table to ARIESID for all (we think)
  3. This lab has loaded data to ~200 ID to SECTRA since ~2-3 years ago but older scans are on CD / hard drive in the lab
  4. Start loading "things" to ARIES using the SECTRA PACS to pull to Posda & curate there.

Collection 2: Dataset(s) from NDLAaron
  1. Passthrough ARIES IDs? Or consistent process through Sohrab's tool for this lab's project IDs? He can set this up for NDL (does not have linkages required for AR-CDR or SECTRA
  2. Discussion with Aaron and Bill to set up sharedrive to pull data into Posda
    1. DICOM
    2. NIfTI (not yet) (BIDS format with JSON sidecar) "Processed Data"
    3. Spreadsheets associated have been deidentified; do NOT yet have ARIES ID in the spreadsheets - interval offsets can be applied programmatically but may not yet have been

Collection 3: Dataset(s) from IoAAaron
  1. Sohrab needs to know who from their team needs access to the utility that will create IDs for their study
  2. Aaron can pass a bag of disks of images for import to Posda

Collection 4: Dataset(s) from MMdbPhil

On the HorizonFred

Action items

  • Stand up a wiki
    • meeting notes
    • collections status
    • infrastructure status (infrastructure notes page that is team-restricted)
  • Plan next step toward Neurocog data transfer
  • Plan next steps toward DICOM data transfer
    • Posda instance upgrade
    • NBIA instance upgrade
    • SECTRA PACS send of TT3 (nonTCIA) data
  • Next step for Gait lab data transfer

  • Aaron reports Gohar will input their subject ID / MRN and Sohrab can work with those; then we can use the ARIES ID to link to (b) SECTRA and (c) AR-CDR

  • Sohrab & Mahanaz are writng a paper about mapping identities for J Biomed Inform with Fred; this describes both “giving you a new ID” and “taking your research ID” into the database.


  • Phil and Michael have a functioning query-retrieve from the SECTRA PACS. This has fed 10 data to TCIA-Posda, Bill reports he and Terri are doing well managing this process. They are preparing to set up pipelines to feed to ARIES-Posda as well.

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